Institute of Neuroscience Faculty

 

Publications

• Crump, J.G., M.E. Swartz, J.K., Eberhart, C.B. and Kimmel (2005).  Moz-dependent Hox Expression Controls Segment-Specific Fate Maps of Skeletal Precursors In The Face. Development 133 (14): 2661-9

• Walker, M., C. Miller, and C.B. Kimmel (2005) A zebrafish furin regulates jaw development and is a potential activator of endothelin1 signaling. Dev Biol., 295 (1):194-205.

• Eberhart, J. K., ME Swartz, J.G. Crump and C.B Kimmel (2005). Early Hedgehog signaling from neural to oral epithelia organizes anterior craniofacial development. Development, 133 (6): 1069-77

• Crump JG, Maves L, Lawson ND, Weinstein BM and CB Kimmel. (2004) An essential role for Fgfs in endodermal pouch formation influences later craniofacial skeletal patterning. Development. 131(22):5703-16.

• Crump JG, Swartz ME and CB Kimmel. (2004)An integrin-dependent role of pouch endoderm in hyoid cartilage development. PLoS Biol. 2 (9):E244. Epub

• Miller CT , Maves L and CB Kimmel. (2004) moz regulates Hox expression and pharyngeal segmental identity in zebrafish. Development . 131(10):2443-61.

• Cresko WA , Amores A, Wilson C, Murphy J, Currey M, Phillips P, Bell MA , Kimmel CB and JH Postlethwait (2004) Parallel genetic basis for repeated evolution of armor loss in Alaskan threespine stickleback populations. Proc Natl Acad Sci U S A. 101(16):6050-5.

• Kimmel CB and JA Weston (2003) An overview of Trink's scientific accomplishments. Dev Dyn . 228(4) :586-7.

• Draper BW, Stock DW, Kimmel CB. (2003) Zebrafish fgf24 functions with fgf8 to promote posterior mesodermal development. Development .130 (19):4639-54.

• Glickman, N.S., C.B. Kimmel, M.A. Jones, and R.J. Adams (2003) Shaping the zebrafish notochord. Development 130 (5):873-887.

• Amacher, S.L., B.W. Draper, B.R. Summers, and C.B. Kimmel (2002) The zebrafish T-box genes no tail and spadetail are required for development of trunk and tail mesoderm and medial floor plate. Development 129(14):3311-3323

• Henry, C.A., M.K. Urban, K.K. Dill, J.P. Merlie, M.F. Page, C.B. Kimmel, and S.L. Amacher (2002) Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. Development 129(15):3693-3704.

• Maves, L., W. Jackman, and C.B. Kimmel (2002) FGF3 and FGF8 mediate a rhombomere 4 signaling activity in the zebrafish hindbrain. Development 129(16):3825-3837.

• Cooke, J.E., C.B. Moens, L.W. Roth, L. Durbin, K. Shiomi, C. Brennan, C.B. Kimmel, S.W. Wilson, N. Holder (2001) Eph signalling functions downstream of Val to regulate cell sorting and boundary formation in the caudal hindbrain. Development 128:571-580.

• Draper, B.W., P.A. Morcos, and C.B. Kimmel (2001) Inhibition of fgf8 pre-mRNA splicing with morpholino oligos: a quantifiable method for gene knockdown. Genesis 30(3):154-156.

• Kimmel, C.B., C.T. Miller, and R.D. Keynes (2001) Neural crest patterning and the evolution of the jaw. J. Anat. 199(1-2):105-120.

• Kimmel, C.B., C.T. Miller, and C.B. Moens (2001) Specification and morphogenesis of the zebrafish larval head skeleton. Dev. Biol. 233:239-257.

• Miller, C.T. and Kimmel, C.B. (2001) Morpholino phenocopies of endothelin 1 (sucker) and other anterior arch class mutations. Genesis 30(3):186-187.

• Jackman, W.R., J.A. Langeland, and C.B. Kimmel (2000) islet reveals segmentation in the amphioxus hindbrain homolog. Dev. Biol. 220:16-26.

• Miller, C.T., Schilling, T.F., Lee, K., Parker, J., and Kimmel, C.B. (2000) sucker encodes a zebrafish Endothelin-1 required for ventral pharyngeal arch development. Development 127(17):3815-3828.

• Pöpperl, H., Rikhof, H., Chang, H., Haffter, P., Kimmel, C.B., and Moens, C.B. (2000) lazarus is a novel pbx gene that globally mediates Hox gene function in zebrafish. Mol. Cell 6(2):255-267.

• Amacher, S.L. and Kimmel, C.B. (1998) Does vertebrate segmentation utilize pair-rules?. Dev. Biol. 198:201.

• Amacher, S.L. and Kimmel, C.B. (1998) Promoting notochord fate and repressing muscle development in zebrafish axial mesoderm. Development 125:1397-1406.

• Griffin, K.J.P., Amacher, S.L., Kimmel, C.B., and Kimelman, D. (1998) Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development 125:3379-3388.

• Kimmel, C.B., Miller, C.T., Kruse, G., Ullmann, B., BreMiller, R.A., Larison, K.D., and Snyder, H.C. (1998) The shaping of the pharnygeal cartilages during early development of the zebrafish. Dev. Biol. 203:245-263.

• Langeland, J.A., J.M. Tomsa, W.R. Jackman, Jr, and C.B. Kimmel (1998) An amphioxus snail gene: expression in paraxial mesoderm and neural plate suggests a conserved role in patterning the chordate embryo. Dev. Genes Evol. 208:569-577.

• Moens, C.B., Cordes, S.P., Giorgianni, M.W., Barsh, G.S., and Kimmel, C.B, (1998) Equivalence in the genetic control of hindbrain segmentation in fish and mouse. Development 125:381-391.

• Prince, V.E., Moens, C.B., Kimmel, C.B., and Ho, R.K. (1998) Zebrafish hox genes: expression in the hindbrain region of wild-type and mutants of the segmentation gene valentino. Development 125:393-406.

• Talbot, W.S., Egan, E.S., Gates, M.A., Walker, C., Ullmann, B., Neuhauss, S.C.F., Kimmel, C.B., and Postlethwait, J.H. (1998) Genetic analysis of chromosomal rearrangements in the cyclops region of the zebrafish genome. Genetics 148:373-380.

• Yamamoto, A., Amacher, S.L., Kim, S.-H., Geissert, D., Kimmel, C.B., and De Robertis, E.M. (1998) Zebrafish paraxial protocadherin is a downstream target of spadetail involved in morphogenesis of gastrula mesoderm. Development 125:3389-3397.

• Beattie, C.E., Hatta, K., Halpern, M.E., Liu, H., Eisen, J.S., and Kimmel, C.B. (1997) Temporal separation in the specification of primary and secondary motoneurons in zebrafish. Dev. Biol. 187(2):171-182.

• Chandrasekhar, A., Moens, C.B., Warren, J.T., Kimmel, C.B., and Kuwada, J.Y. (1997) Development of branchiomotor neurons in zebrafish. Development 124(13):2633-2644.

• Cooper, M.S. and Kimmel, C.B. (1997) Morphogenetic cell behaviors during early teleost development. In Motion Analysis in Living Cells. Soll-D-R., ed., New York: Wiley-Liss.

• Halpern, M.E., Hatta, K., Amacher, S.L., Talbot, W.S., Yan, Y.-L., Thisse, B., Thisse, C., Postlethwait, J.H., and Kimmel, C.B. (1997) Genetic interactions in zebrafish midline development. Dev. Biol. 187(2):154-170.

• Melby, A.E., Kimelman, D., and Kimmel, C.B. (1997) Spatial regulation of floating head expression in the developing notochord. Dev. Dyn. 209(2):156-165.

• Schilling, T.F. and Kimmel, C.B. (1997) Musculoskeletal patterning in the pharyngeal segments of the zebrafish embryo. Development 124(15):2945-2960.

• Melby, A.E., Warga, R.M., and Kimmel, C.B. (1996) Specification of cell fates at the dorsal margin of the zebrafish gastrula. Development 122:2225-2237.

• Moens, C.B., Yan, Y.L., Appel, B., Force, A.G., and Kimmel, C.B. (1996) valentino, a zebrafish gene required for normal hindbrain segmentation. Development 122:3981-3990.

• Schilling, T.F., Walker, C., and Kimmel, C.B. (1996) The chinless mutation and neural crest cell interactions in zebrafish jaw development. Development 122:1417-1426.

• Halpern, M.E., Thisse, C., Ho, R.K., Thisse, B., Riggleman, B., Trevarrow, B., Weinberg, E.S., Postlethwait, J.H., and Kimmel, C.B. (1995) Cell-autonomous shift from axial to paraxial mesodermal development in zebrafish floating head mutants. Development 121:4257-4264.

• Kimmel, C.B., Ballard, W.W., Kimmel, S.R., Ullmann, B., and Schilling, T.F. (1995) Stages of embryonic development of the zebrafish. Dev. Dyn. 203:253-310.

• Talbot, W.S., Trevarrow, B., Halpern, M.E., Melby, A.E., Farr, G., Postlethwait, J.H., Jowett, T., Kimmel, C.B., and Kimelman, D. (1995) A homeobox gene essential for zebrafish notochord development. Nature 378:150-157.

• Hatta, K., Püschel, A.W., and Kimmel, C.B. (1994) Midline signaling in the primordium of the zebrafish anterior central nervous system. Proc. Natl. Acad. Sci. USA 91:2061-2065.

• Kimmel, C.B., Warga, R.M., and Kane, D.A. (1994) Cell cycles and clonal strings during formation of the zebrafish central nervous system. Development 120:265-276.

• Postlethwait, J., Johnson, S., Midson, C.N., Talbot, W.S., Gates, M., Ballenger, E.W., Africa, D., Andrews, R., Carl, T., Eisen, J.S., Horne, S., Kimmel, C.B., Hutchinson, M., Johnson, M., and Rodriguez, A. (1994) A genetic linkage map for the zebrafish. Science 264:699-703.

• Schilling, T.F. and Kimmel, C.B. (1994) Segment and cell type lineage restrictions during pharyngeal arch development in the zebrafish embryo. Development 120:483-494.

• Schulte-Merker, S., van Eeden, F.J.M., Halpern, M.E., Kimmel, C.B., and Nüsslein-Volhard, C. (1994) no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury) gene. Development 120:1009-1015.

• Halpern, M.E., Ho, R.K., Walker, C., and Kimmel, C.B. (1993) Induction of muscle pioneers and floor plate is distinguished by the zebrafish no tail mutation. Cell 75:99-111.

• Hatta, K. and Kimmel, C.B. (1993) Midline structures and central nervous system coordinates in zebrafish. Pers. Dev. Neurobiol. 1:257-268.

• Ho, R.K. and Kimmel, C.B. (1993) Commitment of cell fate in the early zebrafish embryo. Science 261:109-111.

• Kane, D.A. and Kimmel, C.B. (1993) The zebrafish midblastula transition. Development 119:447-456.

• Kimmel, C.B. (1993) Patterning the brain of the zebrafish embryo. Ann. Rev. Neurosci. 16:707-732.

• Kimmel, C.B., Molven, A., Ellis, T.J., Hatta, K., Ho, R.K., Kane, D.A., Schilling, T.F., Walker, C., and Warga, R.M. (1993) Developmental and mutational analysis of body pattern formation: the zebrafish model. In Physiological and Biochemical Aspects of Fish Development, Walther-B-T. and Fyhn-H-J., eds., Bergen, Norway: University of Bergen Press, pp 22-29.

• Kane, D.A., Warga, R.M., and Kimmel, C.B. (1992) Mitotic domains in the early embryo of the zebrafish. Nature 360:735-737.

• Kimmel, C.B., Hatta, K., and Eisen, J.S. (1992) Genetic control of primary neuronal development in zebrafish. Development (Suppl.) 2:47-57.

• Felsenfeld, A.L., Curry, M., and Kimmel, C.B. (1991) The fub-1 mutation blocks initial myofibril formation in zebrafish muscle pioneer cells. Dev. Biol. 148:23-30.

• Hatta, K., BreMiller, R.A., Westerfield, M., and Kimmel, C.B. (1991) Diversity of expression of engrailed-like antigens in zebrafish. Development 112:821-832.

• Hatta, K., Kimmel, C.B., Ho, R.K., and Walker, C. (1991) The cyclops mutation blocks specification of the floor plate of the zebrafish central nervous system. Nature 350:339-341.

• Kimmel, C.B., Kane, D.A., and Ho, R.K. (1991) Lineage specification during early embryonic development of the zebrafish. In Cell-Cell Interactions in Early Development, J. Gerhart, ed., Wiley, N.Y., pp. 203-225.

• Kimmel, C.B., Schilling, T.F., and Hatta, K. (1991) Patterning of body segments of the zebrafish embryo. Curr. Top. Dev. Biol. 25:77-110.

• Schilling, T.F., Walker, C., and Kimmel, C.B. (1991) Mutations that disrupt the development of cranial neural crest cells in the zebrafish. Soc. Neurosci. Abstr. 17:924.

• Felsenfeld, A.L., Walker, C., Westerfield, M., Kimmel, C., and Streisinger, G. (1990) Mutations affecting skeletal muscle myofibril structure in the zebrafish. Development 108:443-459.

• Hatta, K., Schilling, T.F., BreMiller, R.A., and Kimmel, C.B. (1990) Specification of jaw muscle identity in zebrafish: correlation with engrailed-homeoprotein expression. Science 250:802-805.

• Kimmel, C.B. (1990) Embryonic origins of segmented nervous systems. In Molecular Approaches Toward Supracellular Phenomena. Roth-S., ed., University of Pennsylvania Press, pp 137-174.

• Kimmel, C.B. and Westerfield, M. (1990) Primary neurons of the zebrafish. In Signal and Sense, G.M. Edelman, W.E. Gall, and M.W. Cowan, eds., New York: Wiley-Liss, pp. 561-588.

• Kimmel, C.B., Hatta, K., and Metcalfe, W.K. (1990) Early axonal contacts during development of an identified dendrite in the brain of the zebrafish. Neuron 4:535-545.

• Kimmel, C.B., Warga, R.M., and Schilling, T.F. (1990) Origin and organization of the zebrafish fate map. Development 108:581-594.

• Metcalfe, W.K., Myers, P.Z., Trevarrow, B., Bass, M.B., and Kimmel, C.B. (1990) Primary neurons that express the L2-HNK-1 carbohydrate during early development in the zebrafish. Development 110:491-504.

• Molven, A., Wright, C.V.E., BreMiller, R., De Robertis, E.M., and Kimmel, C.B. (1990) Expression of a homeobox gene product in normal and mutant zebrafish embryos: evolution of the tetrapod body plan. Development 109:279-288.

• Schilling, T.F., Hatta, K., Walker, C., and Kimmel, C.B. (1990) Jaw muscles do not differentiate in a zebrafish mutant that lacks neural crest derived jaw cartilage. J. Cell Biol. 111:238A.

• Trevarrow, B., Marks, D.L., and Kimmel, C.B. (1990) Organization of hindbrain segments in the zebrafish embryo. Neuron 4:669-679.

• Warga, R.M. and Kimmel, C.B. (1990) Cell movements during epiboly and gastrulation in zebrafish. Development 108:569-580.

• Westerfield, M., Liu, D.W., Kimmel, C.B., and Walker, C. (1990) Pathfinding and synapse formation in a zebrafish mutant lacking functional acetylcholine receptors. Neuron 4:867-874.

• Kimmel, C.B. (1989) Genetics and early development of zebrafish. Trends Genet. 5:283-288.

• Kimmel, C.B., Kane, D.A., Walker, C., Warga, R.M., and Rothman, M.B. (1989) A mutation that changes cell movement and cell fate in the zebrafish embryo. Nature 337:358-362.

• Schilling, T.F., Warga, R.M., and Kimmel, C.B. (1989) Cranial muscles and motoneurons that innervate them originate from the same axial levels in the zebrafish. Soc. Neurosci. Abstr. 15:810.

• Grunwald, D.J., Kimmel, C.B., Westerfield, M., Walker, C., and Streisinger, G. (1988) A neural degeneration mutation that spares primary neurons in the zebrafish. Dev. Biol. 126:115-128.

• Hanneman, E., Trevarrow, B., Metcalfe, W.K., Kimmel, C.B., and Westerfield, M. (1988) Segmental pattern of development of the hindbrain and spinal cord of the zebrafish embryo. Development 103:49-58.

• Kimmel, C.B. and Warga, R.M. (1988) Cell lineage and developmental potential of cells in the zebrafish embryo. Trends Gen. 4:68-74.

• Kimmel, C.B., Sepich, D.S., and Trevarrow, B. (1988) Development of segmentation in zebrafish. Development (Camb) 104:197-208.

• Kimmel, C.B. (1987) Developmental Neurobiology. In Developmental Biology. N. Holder and V. Walbot, eds., pp. 518-550.

• Kimmel, C.B. and Warga, R.M. (1987) Indeterminate cell lineage of the zebrafish embryo. Dev. Biol. 124:269-280.

• Kimmel, C.B. and Warga, R.M. (1987) Cell lineages and movements in the formation of the zebrafish embryonic axis. Soc. Neurosci. Abstr. 13:891.

• Kimmel, C.B. and Warga, R.M. (1987) Cell lineages generating axial muscle in the zebrafish embryo. Nature 327:234-237.

• Myers, P.Z., Eisen, J.S., and Kimmel, C.B. (1987) The early development of Rohon-Beard neurons in embryonic zebrafish. Soc. Neurosci. Abstr. 13:5.

• Trevarrow, W.W., Metcalfe, W.K., Kimmel, C.B., and Marks, D. (1987) The zebrafish hindbrain is segmentally organized. Soc. Neurosci. Abstr. 13:255.

• Westerfield, M., Kimmel, C.B., and Walker, C. (1987) Normal pathfinding by pioneer motor growth cones in mutant zebrafish lacking functional acetylcholine receptors. Soc. Neurosci. Abstr. 13:5.

• Kimmel, C.B. and Warga, R.M. (1986) Tissue specific cell lineages originate in the gastrula of the zebrafish. Science 231:356-368.

• Mendelson, B. and Kimmel, C.B. (1986) Identified vertebrate neurons that differ in axonal projection develop together. Dev. Biol. 118:309-313.

• Metcalfe, W.K., Mendelson, B., and Kimmel, C.B. (1986) Segmental homologies among reticulospinal neurons in the hindbrain of the zebrafish larva. J. Comp. Neurol. 251:147-159.

• Westerfield, M., Eise
• n, J.S., Myers, P.Z., McMurray, J.V., and Kimmel, C.B. (1986) Early neurogenesis in the zebrafish. Proc. Int. Union Physiol. Sci. 16:20.

• Kimmel, C.B. and Law, R.D. (1985) Cell lineage of zebrafish blastomeres. II. Formation of the yolk syncytial layer. Dev. Biol. 108:86-93.

• Kimmel, C.B. and Law, R.D. (1985) Cell lineage of zebrafish blastomeres. I. Cleavage pattern and cytoplasmic bridges between cells. Dev. Biol. 108:78-85.

• Kimmel, C.B. and Law, R.D. (1985) Cell lineage of zebrafish blastomeres. III. Clonal analysis of the blastula and gastrula stages. Dev. Biol. 108:94-101.

• Kimmel, C.B. and Warga, R.M. (1985) Embryonic lineages and migrations of cells during epiboly and axis formation in the zebrafish. J. Cell. Biochem. Suppl. 9B:272.

• Kimmel, C.B., Grunwald, D.J., Walker, C., Westerfield, M., and Streisinger, G. (1985) Neuronal degeneration mutations that spare primary neurons in the zebrafish. Soc. Neurosci. Abstr. 11:647.

• Kimmel, C.B., Metcalfe, W.K., and Schabtach, E. (1985) T reticular interneurons: a class of serially repeating cells in the zebrafish hindbrain. J. Comp. Neurol. 233:365-376.

• Metcalfe, W.K., Kimmel, C.B., and Mendelson, B. (1985) Segmental patterning of morphological types of reticulospinal neurons in larval zebrafish. Soc. Neurosci. Abstr. 11:604.

• Metcalfe, W.K., Kimmel, C.B., and Schabtach, E. (1985) Anatomy of the posterior lateral line system in young larvae of the zebrafish. J. Comp. Neurol. 233:377-389.

• Kimmel, C.B., Warga, R., and Law, R.D. (1984) Cellular lineages forming the zebrafish nervous system. Soc. Neurosci. Abstr. 10:1044.

• Kimmel, C.B. (1982) Reticulospinal and vestibulospinal neurons in the young larva of a teleost fish, Brachydanio rerio. Prog. Brain Res. 57:1-23.

• Kimmel, C.B. (1982) Development of synapses on the Mauthner neuron. Trends Neurosci. 5:47-50.

• Kimmel, C.B., Metcalfe, W.K., and Schabtach, E. (1982) Reticular interneurons with T-shaped axons in embryos of the zebrafish. Soc. Neurosci. Abstr. 8:764.

• Kimmel, C.B., Powell, S.L., and Kimmel, R.J. (1982) Specific reduction of development of the Mauthner neuron lateral dendrite after otic capsule ablation in Brachydanio rerio. Dev. Biol. 91:468-473.

• Kimmel, C.B., Powell, S.L., and Metcalfe, W.K. (1982) Brain neurons which project to the spinal cord in young larvae of the zebrafish. J. Comp. Neurol. 205:112-127.

• Metcalfe, W.K. and Kimmel, C.B. (1982) Three types of posterior lateral line efferent neurons in larval zebrafish. Soc. Neurosci. Abstr. 8:763.

• Prugh, J.I.P., Kimmel, C.B., and Metcalfe, W.K. (1982) Noninvasive recording of the Mauthner neuron action potential in larval zebrafish (Brachydanio rerio). J. Exp. Biol. 101:83-92.

• Kimmel, C.B., Sessions, S.K., and Kimmel, R.J. (1981) Morphogenesis and synaptogenesis of the zebrafish Mauthner neuron. J. Comp. Neurol. 198:101-120.

• Eaton, R.C. and Kimmel, C.B. (1980) Directional sensitivity of the Mauthner cell system to vibrational stimulation in zebrafish (Brachydanio rerio) larvae. J. Comp. Physiol. A 140:337-342.

• Kimmel, C.B. and Powell, S.L. (1980) Brain neurons that project to the spinal cord in young larvae of the zebrafish. Soc. Neurosci. Abstr. 6:628.

• Kimmel, C.B., Eaton, R.C., and Powell, S.L. (1980) Decreased fast-start performance of zebrafish (Brachydanio rerio) larvae lacking Mauthner neurons. J. Comp. Physiol. A 140:343-350.

• Kimmel, C.B., Sessions, S.K., and Kimmel, R.J. (1979) Target recognition in neurogenesis: formation of the Mauthner axon cap. Proc. Natl. Acad. Sci. USA 76:4691-4694.

• Eaton, R.C., Kimmel, C.B., and Sessions, S.K. (1978) The Mauthner system mediates directional responses to local vibrational stimuli. Soc. Neurosci. Abstr. 4:361.

• Kimmel, C.B. and Model, P. (1978) Developmental studies of the Mauthner cell. In Neurobiology of the Mauthner Cell. Faber-D-S. and Korn-H., eds. New York: Raven Press, pp. 183-220.

• Kimmel, C.B., Powell, S.L., and Eaton, R.C. (1978) Does the Mauthner cell mediate unique behavior?. Soc. Neurosci. Abstr. 4:362.

• Kimmel, C.B., Sessions, S.K., and Kimmel, R.J. (1978) Radiosensitivity and time of origin of Mauthner neuron in the zebra fish. Dev. Biol. 62:526-529.

• Eaton, R.C. and Kimmel, C.B. (1977) Function of the Mauthner cell in the developing zebra fish. Proc. Int. Union Physiol. Sci. 13:203.

• Eaton, R.C., Farley, R.D., Kimmel, C.B., and Schabtach, E. (1977) Functional development in the Mauthner cell system of embryos and larvae of the zebrafish. J. Neurobiol. 8:151-172.

• Kimmel, C.B. and Eaton, R.C. (1976) Development of the Mauthner cell. In Simpler Networks and Behaviour. Fentress-J-C. ed., Sunderland, MA: Sinauer Associates Inc., pp. 186-202.

• Kimmel, C.B., Patterson, J., and Kimmel, R.J. (1974) The development and behavioral characteristics of the startle response in the zebra fish. Dev. Psychobiol. 7:47-60.

• Kimmel, C.B. (1972) Mauthner axons in living fish larvae. Dev. Biol. 27:272-275.

• Department of Biology
• Department of Psychology
• Department of Human Physiology